Supplementary materials for "Genome-wide bioinformatic analyses predict key host and viral factors in SARS-CoV-2 pathogenesis"

Supplementary materials for the bioRxiv preprint "Genome-wide bioinformatic analyses predict key host and viral factors in SARS-CoV-2 pathogenesis" (https://doi.org/10.1101/2020.07.28.225581). These include: Supplementary Figure 1. Isoform Analysis. Supplementary File 1. Zipped file containing Complete DEG tables. Supplementary File 2. Zipped file containing GO for each dataset. Supplementary File 3. TE family count/differential expression. Supplementary File 4. GREAT Analysis (complete and per family). Zipped file containing 11 supplementary tables: Supplementary Table 1. Merged tables (Specific genes in SARS-CoV-2) Supplementary Table 2. Supporting information for Figure 2, consisting of functional 563 enrichment specific to SARS-CoV-2. Supplementary Table 3. Pathway enrichment for each dataset (SPIA and DAVID merged into 565 one file). Supplementary Table 4. Metabolic fluxes predicted for each dataset using Moomin. Supplementary Table 5. Isoform analysis. Supplementary Table 6. Putative binding sites for human RBPs on the SARS-CoV-2 genome. Supplementary Table 7. Enrichment of binding motifs for human RBPs on the SARS-CoV-2 570 genome. Supplementary Table 8. Conservation of binding motifs for human RBPs across genome 572 sequences of SARS-CoV-2 isolates. Supplementary Table 9. Biological evidence associated with putative SARS-CoV-2 interacting 574 human RBPs. Supplementary Table 10. Enrichment of binding motifs for human RBPs on the SARS-CoV 576 genome Supplementary Table 11. Enrichment of binding motifs for human RBPs on the RaTG13 genom